As a Graduate Student Assistant for ACO 430: Wireless Networks & Security at Arizona State University, I was challenged to look at a traditional network analysis project through a new lens. The ...

Plasmids are extrachromosomal DNA molecules that enable horizontal gene transfer in bacteria, often conferring advantages such as antibiotic resistance. Despite their importance, plasmids are ...

The fastest Python implementation of the ForceAtlas2 graph layout algorithm, with Cython optimization for 10-100x speedup. Supports NetworkX, igraph, and raw adjacency matrices. ForceAtlas2 is a force ...

The PyGSP is a Python package to ease Signal Processing on Graphs. The documentation is available on Read the Docs and development takes place on GitHub. A (mostly unmaintained) Matlab version exists.

In the rapidly evolving world of artificial intelligence and natural language processing, retrieval-augmented generation (RAG) has become a game-changer. However, traditional RAG systems, while ...

This important study dissects the mathematical and biological assumptions underlying the commonly used Activity-by-Contact model of enhancer action in transcriptional regulation. The authors provide a ...

We used network analysis to identify subtypes of relapsing-remitting multiple sclerosis subjects based on their cumulative signs and symptoms. The electronic medical records of 113 subjects with ...

Lung Cancer Diagnosed Through Screening, Lung Nodule, and Neither Program: A Prospective Observational Study of the Detecting Early Lung Cancer (DELUGE) in the Mississippi Delta Cohort Of 323 included ...